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Biblio

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2014
Niarakis A, Bounab Y, Grieco L, Roncagalli R, Hesse A-M, Garin J, Malissen B, Daëron M, Thieffry D.  2014.  Computational modeling of the main signaling pathways involved in mast cell activation. Current topics in microbiology and immunology. 382:69-93. Abstract
2013
Mbodj A, Junion G, Brun C, Furlong EEM, Thieffry D.  2013.  Logical modelling of Drosophila signalling pathways.. Molecular bioSystems. 9(9):2248-58. Abstract
Grieco L, Calzone L, Bernard-Pierrot I, Radvanyi F, Kahn-Perlès B, Thieffry D.  2013.  Integrative modelling of the influence of MAPK network on cancer cell fate decision.. PLoS computational biology. 9(10):e1003286. Abstract
2012
Chaouiya C, Naldi A, Thieffry D.  2012.  Logical Modelling of Gene Regulatory Networks with GINsim.. Methods in molecular biology (Clifton, N.J.). 804:463-79. Abstract
2011
Naldi A, Remy E, Thieffry D, Chaouiya C.  2011.  Dynamically consistent reduction of logical regulatory graphs. Theoretical Computer Science. 412(21):2207-2218.
2010
Naldi A, Carneiro J, Chaouiya C, Thieffry D.  2010.  Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling. PLoS Computational Biology. 6(9):e1000912.
Calzone L, Tournier L, Fourquet S, Thieffry D, Zhivotovsky B, Barillot E, Zinovyev A.  2010.  Mathematical modelling of cell-fate decision in response to death receptor engagement.. PLoS computational biology. 6(3):e1000702. Abstract
2009
Fauré A, Naldi A, Lopez F, Chaouiya C, Ciliberto A, Thieffry D.  2009.  Modular logical modelling of the budding yeast cell cycle.. Molecular bioSystems. 5(12):1787-96. Abstract
Fauré A, Thieffry D.  2009.  Logical modelling of cell cycle control in eukaryotes: a comparative study. Molecular BioSystems. 5(12):1569.
Sahin O, Fröhlich H, Löbke C, Korf U, Burmester S, Majety M, Mattern J, Schupp I, Chaouiya C, Thieffry D et al..  2009.  Modeling ERBB receptor-regulated G1/S transition to find novel targets for de novo trastuzumab resistance. BMC systems biology. 3:1. Abstract
2008
Sánchez L, Chaouiya C, Thieffry D.  2008.  Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory module.. The International journal of developmental biology. 52(8):1059-75. Abstract
2007
Naldi A, Thieffry D, Chaouiya C.  2007.  Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks. Computational Methods in Systems Biology. 4695:233-247.
2006
Fauré A, Naldi A, Chaouiya C, Thieffry D.  2006.  Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle.. Bioinformatics (Oxford, England). 22(14):e124-31. Abstract
2003
Sánchez L, Thieffry D.  2003.  Segmenting the fly embryo: a logical analysis of the pair-rule cross-regulatory module. Journal of Theoretical Biology. 224(4):517-537.
Chaouiya C, Remy E, Mossé B, Thieffry D.  2003.  Qualitative Analysis of Regulatory Graphs: A Computational Tool Based on a Discrete Formal Framework. Positive Systems. 294:830-832.
2001
Sánchez L, Thieffry D.  2001.  A Logical Analysis of the Drosophila Gap-gene System. Journal of Theoretical Biology. 211(2):115-141.


by Dr. Radut